IL_7ZHG_084

3D structure

PDB id

7ZHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loop

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

(5MC)CUAAAG*(4AC)G

Length

9 nucleotides

Bulged bases

7ZHG|1|2|A|538

QA status

Modified nucleotides: 5MC, 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZHG|1|2|5MC|535
7ZHG|1|2|C|536
7ZHG|1|2|U|537
7ZHG|1|2|A|538
7ZHG|1|2|A|539
7ZHG|1|2|A|540
7ZHG|1|2|G|541
*
7ZHG|1|2|4AC|851
7ZHG|1|2|G|852

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain 0

50S ribosomal protein L41e

Chain N

30S ribosomal protein S12