IL_7ZJX_004

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

7ZJX|1|L5|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_004 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.1339

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7ZJX|1|L5|A|12
7ZJX|1|L5|U|13
7ZJX|1|L5|C|14
*
7ZJX|1|L8|G|143
7ZJX|1|L8|U|144

Current chains

Chain L5

28S rRNA

Chain L8

5.8S rRNA

Nearby chains

Chain LJ

60S ribosomal protein eL8

Chain LQ

Ribosomal protein L15

Chain La

Ribosomal_L23eN domain-containing protein