IL_7ZJX_037

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGG*CG

Length

7 nucleotides

Bulged bases

7ZJX|1|L5|G|723, 7ZJX|1|L5|G|724

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_037 not in the Motif Atlas

Geometric match to IL_8GLP_036

Geometric discrepancy: 0.1064

The information below is about IL_8GLP_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75501.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

7ZJX|1|L5|C|721
7ZJX|1|L5|U|722
7ZJX|1|L5|G|723
7ZJX|1|L5|G|724
7ZJX|1|L5|G|725
*
7ZJX|1|L5|C|838
7ZJX|1|L5|G|839

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal Protein uL30

Chain LP

60S ribosomal protein L14

Chain LV

60S ribosomal protein eL20