IL_7ZJX_039

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCCG*CCCG

Length

8 nucleotides

Bulged bases

7ZJX|1|L5|C|732, 7ZJX|1|L5|C|733, 7ZJX|1|L5|C|823, 7ZJX|1|L5|C|824

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_039 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.3524

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

7ZJX|1|L5|C|731
7ZJX|1|L5|C|732
7ZJX|1|L5|C|733
7ZJX|1|L5|G|734
*
7ZJX|1|L5|C|822
7ZJX|1|L5|C|823
7ZJX|1|L5|C|824
7ZJX|1|L5|G|825

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L4

Chain LP

60S ribosomal protein L14