IL_7ZJX_052

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC(OMG)A(A2M)AG*CUAGUAGCUG

Length

17 nucleotides

Bulged bases

7ZJX|1|L5|A|1605, 7ZJX|1|L5|G|1609

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJX|1|L5|C|1475
7ZJX|1|L5|C|1476
7ZJX|1|L5|OMG|1477
7ZJX|1|L5|A|1478
7ZJX|1|L5|A2M|1479
7ZJX|1|L5|A|1480
7ZJX|1|L5|G|1481
*
7ZJX|1|L5|C|1603
7ZJX|1|L5|U|1604
7ZJX|1|L5|A|1605
7ZJX|1|L5|G|1606
7ZJX|1|L5|U|1607
7ZJX|1|L5|A|1608
7ZJX|1|L5|G|1609
7ZJX|1|L5|C|1610
7ZJX|1|L5|U|1611
7ZJX|1|L5|G|1612

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L4

Chain LO

60S ribosomal protein eL13

Chain LQ

Ribosomal protein L15

Chain Ld

60S ribosomal protein L27a

Chain Lm

Ribosomal protein L37