IL_7ZJX_053

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

7ZJX|1|L5|A|1568

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_053 not in the Motif Atlas

Geometric match to IL_7RQB_019

Geometric discrepancy: 0.1121

The information below is about IL_7RQB_019

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

7ZJX|1|L5|G|1500
7ZJX|1|L5|C|1501
*
7ZJX|1|L5|G|1567
7ZJX|1|L5|A|1568
7ZJX|1|L5|C|1569

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein uL2

Chain Lj

60S ribosomal protein L34

Chain Lr

60S ribosomal protein eL43