IL_7ZJX_054

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GGU

Length

5 nucleotides

Bulged bases

7ZJX|1|L5|G|1532

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_054 not in the Motif Atlas

Geometric match to IL_4V9F_026

Geometric discrepancy: 0.1954

The information below is about IL_4V9F_026

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

7ZJX|1|L5|G|1505
7ZJX|1|L5|C|1506
*
7ZJX|1|L5|G|1531
7ZJX|1|L5|G|1532
7ZJX|1|L5|U|1533

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein uL2

Chain LU

60S ribosomal protein L19

Chain Lr

60S ribosomal protein eL43