IL_7ZJX_062

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

7ZJX|1|L5|G|1663

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_062 not in the Motif Atlas

Homologous match to IL_8C3A_040

Geometric discrepancy: 0.1339

The information below is about IL_8C3A_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

7ZJX|1|L5|A|1662
7ZJX|1|L5|G|1663
7ZJX|1|L5|U|1664
*
7ZJX|1|L5|A|1777
7ZJX|1|L5|U|1778

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal Protein uL30

Chain LW

60S ribosomal protein L21

Chain Le

60S ribosomal protein L29