IL_7ZJX_066

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_066 not in the Motif Atlas

Geometric match to IL_4LFB_025

Geometric discrepancy: 0.2391

The information below is about IL_4LFB_025

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

29

Unit IDs

7ZJX|1|L5|G|1692
7ZJX|1|L5|U|1693
7ZJX|1|L5|C|1694
7ZJX|1|L5|U|1695
*
7ZJX|1|L5|A|1715
7ZJX|1|L5|C|1716

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LG

Ribosomal_L18_c domain-containing protein