IL_7ZJX_072

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGC*GG

Length

5 nucleotides

Bulged bases

7ZJX|1|L5|G|1858

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_072 not in the Motif Atlas

Geometric match to IL_7D7V_002

Geometric discrepancy: 0.3998

The information below is about IL_7D7V_002

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

7ZJX|1|L5|U|1857
7ZJX|1|L5|G|1858
7ZJX|1|L5|C|1859
*
7ZJX|1|L5|G|2002
7ZJX|1|L5|G|2003

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal Protein uL30

Chain LP

60S ribosomal protein L14

Chain LR

60S ribosomal protein uL13

Chain LV

60S ribosomal protein eL20

Chain Li

60S ribosomal protein L35a