IL_7ZJX_088

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

7ZJX|1|L5|G|2389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_088 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2315

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7ZJX|1|L5|G|2385
7ZJX|1|L5|A|2386
7ZJX|1|L5|G|2387
7ZJX|1|L5|U|2388
7ZJX|1|L5|G|2389
7ZJX|1|L5|G|2390
*
7ZJX|1|L5|C|2615
7ZJX|1|L5|G|2616
7ZJX|1|L5|C|2617

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Ln

60S ribosomal protein L38