IL_7ZJX_089

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

7ZJX|1|L5|U|2612

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_089 not in the Motif Atlas

Geometric match to IL_2A64_002

Geometric discrepancy: 0.2557

The information below is about IL_2A64_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7ZJX|1|L5|G|2392
7ZJX|1|L5|G|2393
*
7ZJX|1|L5|C|2611
7ZJX|1|L5|U|2612
7ZJX|1|L5|C|2613

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lj

60S ribosomal protein L34