IL_7ZJX_110

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

7ZJX|1|L5|A|3479

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_110 not in the Motif Atlas

Geometric match to IL_7A0S_067

Geometric discrepancy: 0.2482

The information below is about IL_7A0S_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

7ZJX|1|L5|U|3436
7ZJX|1|L5|G|3437
*
7ZJX|1|L5|U|3477
7ZJX|1|L5|A|3478
7ZJX|1|L5|A|3479
7ZJX|1|L5|A|3480

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein uL2

Chain S2

Small subunit ribosomal RNA; SSU rRNA