IL_7ZJX_113

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_113 not in the Motif Atlas

Geometric match to IL_4WF9_003

Geometric discrepancy: 0.3592

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_90351.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

7ZJX|1|L5|G|3442
7ZJX|1|L5|A|3443
7ZJX|1|L5|A|3444
7ZJX|1|L5|U|3445
7ZJX|1|L5|G|3446
*
7ZJX|1|L5|C|3471
7ZJX|1|L5|G|3472
7ZJX|1|L5|C|3473

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein uL2

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SM

40S ribosomal protein S3a