IL_7ZJX_126

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

7ZJX|1|L5|G|3929

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_126 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.1224

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

7ZJX|1|L5|U|3659
7ZJX|1|L5|A|3660
7ZJX|1|L5|G|3661
*
7ZJX|1|L5|U|3927
7ZJX|1|L5|G|3928
7ZJX|1|L5|G|3929
7ZJX|1|L5|G|3930

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein uL2

Chain LQ

Ribosomal protein L15

Chain Lq

60S ribosomal protein eL42