IL_7ZJX_127

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

A(OMG)A*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_127 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.1696

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7ZJX|1|L5|A|3675
7ZJX|1|L5|OMG|3676
7ZJX|1|L5|A|3677
*
7ZJX|1|L5|U|3796
7ZJX|1|L5|U|3797
7ZJX|1|L5|U|3798

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ll

60S ribosomal protein L36

Chain SM

40S ribosomal protein S3a