IL_7ZJX_128

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_128 not in the Motif Atlas

Geometric match to IL_5TBW_101

Geometric discrepancy: 0.3672

The information below is about IL_5TBW_101

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_39137.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7ZJX|1|L5|C|3680
7ZJX|1|L5|A|3681
*
7ZJX|1|L5|U|3791
7ZJX|1|L5|C|3792
7ZJX|1|L5|G|3793

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ll

60S ribosomal protein L36