IL_7ZJX_138

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGC*GC

Length

6 nucleotides

Bulged bases

7ZJX|1|L5|G|4095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_138 not in the Motif Atlas

Geometric match to IL_7RQB_058

Geometric discrepancy: 0.2068

The information below is about IL_7RQB_058

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

7ZJX|1|L5|G|4093
7ZJX|1|L5|A|4094
7ZJX|1|L5|G|4095
7ZJX|1|L5|C|4096
*
7ZJX|1|L5|G|4110
7ZJX|1|L5|C|4111

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LO

60S ribosomal protein eL13

Chain LT

60S ribosomal Protein eL18

Chain Ld

60S ribosomal protein L27a

Chain Lq

60S ribosomal protein eL42