IL_7ZJX_148

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(PSU)G*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_148 not in the Motif Atlas

Geometric match to IL_5TBW_047

Geometric discrepancy: 0.2683

The information below is about IL_5TBW_047

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7ZJX|1|L5|G|4216
7ZJX|1|L5|PSU|4217
7ZJX|1|L5|G|4218
*
7ZJX|1|L5|C|4229
7ZJX|1|L5|A|4230
7ZJX|1|L5|C|4231

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LK

60S ribosomal protein L9

Chain Lp

60S ribosomal protein L40