IL_7ZJX_186
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGCAU*A(PSU)A(PSU)U
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJX_186 not in the Motif Atlas
- Geometric match to IL_7VYX_008
- Geometric discrepancy: 0.3975
- The information below is about IL_7VYX_008
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
7ZJX|1|S2|A|22
7ZJX|1|S2|G|23
7ZJX|1|S2|C|24
7ZJX|1|S2|A|25
7ZJX|1|S2|U|26
*
7ZJX|1|S2|A|649
7ZJX|1|S2|PSU|650
7ZJX|1|S2|A|651
7ZJX|1|S2|PSU|652
7ZJX|1|S2|U|653
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SU
- 40S ribosomal protein S9
- Chain Si
- 40S ribosomal protein S23
Coloring options: