IL_7ZJX_188

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAA*UGA(OMC)G

Length

9 nucleotides

Bulged bases

7ZJX|1|S2|A|517

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_188 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3238

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7ZJX|1|S2|C|37
7ZJX|1|S2|A|38
7ZJX|1|S2|A|39
7ZJX|1|S2|A|40
*
7ZJX|1|S2|U|515
7ZJX|1|S2|G|516
7ZJX|1|S2|A|517
7ZJX|1|S2|OMC|518
7ZJX|1|S2|G|519

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein S4

Chain SU

40S ribosomal protein S9