IL_7ZJX_209

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

7ZJX|1|S2|A|556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_209 not in the Motif Atlas

Geometric match to IL_6WPI_001

Geometric discrepancy: 0.2585

The information below is about IL_6WPI_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

7ZJX|1|S2|A|530
7ZJX|1|S2|U|531
*
7ZJX|1|S2|A|555
7ZJX|1|S2|A|556
7ZJX|1|S2|U|557

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S30

Chain SU

40S ribosomal protein S9