3D structure

PDB id
7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome programmed with SECIS and SBP2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UUG*CUA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJX_224 not in the Motif Atlas
Geometric match to IL_4J39_001
Geometric discrepancy: 0.109
The information below is about IL_4J39_001
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

7ZJX|1|S2|U|806
7ZJX|1|S2|U|807
7ZJX|1|S2|G|808
*
7ZJX|1|S2|C|857
7ZJX|1|S2|U|858
7ZJX|1|S2|A|859

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SP
40S ribosomal protein S4
Chain SW
40S ribosomal protein S11
Chain Sh
40S ribosomal protein S15a

Coloring options:


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