IL_7ZJX_225

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAAAA(PSU)(PSU)A*UACCGCAGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJX|1|S2|G|808
7ZJX|1|S2|A|809
7ZJX|1|S2|A|810
7ZJX|1|S2|A|811
7ZJX|1|S2|A|812
7ZJX|1|S2|A|813
7ZJX|1|S2|A|814
7ZJX|1|S2|PSU|815
7ZJX|1|S2|PSU|816
7ZJX|1|S2|A|817
*
7ZJX|1|S2|U|849
7ZJX|1|S2|A|850
7ZJX|1|S2|C|851
7ZJX|1|S2|C|852
7ZJX|1|S2|G|853
7ZJX|1|S2|C|854
7ZJX|1|S2|A|855
7ZJX|1|S2|G|856
7ZJX|1|S2|C|857

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein S4

Chain SU

40S ribosomal protein S9

Chain SW

40S ribosomal protein S11

Chain Sh

40S ribosomal protein S15a