IL_7ZJX_226

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GCCG

Length

6 nucleotides

Bulged bases

7ZJX|1|S2|C|840, 7ZJX|1|S2|C|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_226 not in the Motif Atlas

Geometric match to IL_4V9F_088

Geometric discrepancy: 0.181

The information below is about IL_4V9F_088

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

7ZJX|1|S2|C|834
7ZJX|1|S2|C|835
*
7ZJX|1|S2|G|839
7ZJX|1|S2|C|840
7ZJX|1|S2|C|841
7ZJX|1|S2|G|842

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein S4

Chain SU

40S ribosomal protein S9

Chain Sj

40S ribosomal protein S24