IL_7ZJX_227

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_227 not in the Motif Atlas

Geometric match to IL_5Y85_006

Geometric discrepancy: 0.1093

The information below is about IL_5Y85_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7ZJX|1|S2|G|875
7ZJX|1|S2|A|876
7ZJX|1|S2|C|877
*
7ZJX|1|S2|G|911
7ZJX|1|S2|C|912
7ZJX|1|S2|C|913

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LU

60S ribosomal protein L19

Chain SS

40S ribosomal protein S7

Chain SW

40S ribosomal protein S11