IL_7ZJX_230

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

7ZJX|1|S2|U|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_230 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.124

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7ZJX|1|S2|G|925
7ZJX|1|S2|G|926
7ZJX|1|S2|A|927
7ZJX|1|S2|C|928
*
7ZJX|1|S2|G|1015
7ZJX|1|S2|U|1016
7ZJX|1|S2|U|1017
7ZJX|1|S2|U|1018
7ZJX|1|S2|U|1019

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Lf

60S ribosomal protein L30

Chain SB

40S ribosomal protein S27

Chain SY

40S ribosomal protein S13