IL_7ZJX_243

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

7ZJX|1|S2|A|1696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_243 not in the Motif Atlas

Geometric match to IL_5J7L_039

Geometric discrepancy: 0.1159

The information below is about IL_5J7L_039

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

7ZJX|1|S2|G|1204
7ZJX|1|S2|A|1205
*
7ZJX|1|S2|U|1695
7ZJX|1|S2|A|1696
7ZJX|1|S2|C|1697

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein eS26

Chain SN

40S ribosomal protein uS5