IL_7ZJX_246

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*U(PSU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_246 not in the Motif Atlas

Geometric match to IL_7RQB_030

Geometric discrepancy: 0.268

The information below is about IL_7RQB_030

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7ZJX|1|S2|G|1223
7ZJX|1|S2|A|1224
7ZJX|1|S2|G|1225
*
7ZJX|1|S2|U|1643
7ZJX|1|S2|PSU|1644
7ZJX|1|S2|C|1645

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

Ribosomal protein S5

Chain Sb

40S ribosomal protein uS9