IL_7ZJX_249

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_249 not in the Motif Atlas

Geometric match to IL_5TBW_079

Geometric discrepancy: 0.142

The information below is about IL_5TBW_079

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7ZJX|1|S2|G|1271
7ZJX|1|S2|C|1272
7ZJX|1|S2|C|1273
*
7ZJX|1|S2|G|1511
7ZJX|1|S2|U|1512
7ZJX|1|S2|C|1513

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SD

Ubiquitin carboxyl extension protein 80

Chain SH

40S ribosomal protein S29

Chain SV

S10_plectin domain-containing protein

Chain Sa

40S ribosomal protein S15