IL_7ZJX_256
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- C(4AC)G*CA(OMG)G
- Length
- 7 nucleotides
- Bulged bases
- 7ZJX|1|S2|A|1490
- QA status
- Modified nucleotides: 4AC, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJX_256 not in the Motif Atlas
- Geometric match to IL_1YZ9_001
- Geometric discrepancy: 0.1641
- The information below is about IL_1YZ9_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
7ZJX|1|S2|C|1337
7ZJX|1|S2|4AC|1338
7ZJX|1|S2|G|1339
*
7ZJX|1|S2|C|1489
7ZJX|1|S2|A|1490
7ZJX|1|S2|OMG|1491
7ZJX|1|S2|G|1492
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain I
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
- Chain SH
- 40S ribosomal protein S29
- Chain SN
- 40S ribosomal protein uS5
- Chain SO
- 40S ribosomal protein S3
- Chain Sb
- 40S ribosomal protein uS9
- Chain Sf
- 40S ribosomal protein S20
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