3D structure

PDB id
7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome programmed with SECIS and SBP2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
C(4AC)G*CA(OMG)G
Length
7 nucleotides
Bulged bases
7ZJX|1|S2|A|1490
QA status
Modified nucleotides: 4AC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJX_256 not in the Motif Atlas
Geometric match to IL_1YZ9_001
Geometric discrepancy: 0.1641
The information below is about IL_1YZ9_001
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

7ZJX|1|S2|C|1337
7ZJX|1|S2|4AC|1338
7ZJX|1|S2|G|1339
*
7ZJX|1|S2|C|1489
7ZJX|1|S2|A|1490
7ZJX|1|S2|OMG|1491
7ZJX|1|S2|G|1492

Current chains

Chain S2
18S rRNA

Nearby chains

Chain I
Cripavirus internal ribosome entry site (IRES); CrPV IRES
Chain SH
40S ribosomal protein S29
Chain SN
40S ribosomal protein uS5
Chain SO
40S ribosomal protein S3
Chain Sb
40S ribosomal protein uS9
Chain Sf
40S ribosomal protein S20

Coloring options:


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