IL_7ZJX_260

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAA*U(PSU)A

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_260 not in the Motif Atlas

Geometric match to IL_6CZR_118

Geometric discrepancy: 0.3542

The information below is about IL_6CZR_118

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

183

Unit IDs

7ZJX|1|S2|U|1401
7ZJX|1|S2|A|1402
7ZJX|1|S2|A|1403
*
7ZJX|1|S2|U|1445
7ZJX|1|S2|PSU|1446
7ZJX|1|S2|A|1447

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

Guanine nucleotide-binding protein subunit beta-2-like 1

Chain Sb

40S ribosomal protein uS9

Chain Sf

40S ribosomal protein S20