IL_7ZJX_263

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

7ZJX|1|S2|G|1429

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_263 not in the Motif Atlas

Geometric match to IL_5J7L_019

Geometric discrepancy: 0.3385

The information below is about IL_5J7L_019

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

7ZJX|1|S2|C|1413
7ZJX|1|S2|G|1414
*
7ZJX|1|S2|C|1428
7ZJX|1|S2|G|1429
7ZJX|1|S2|G|1430

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Sb

40S ribosomal protein uS9

Chain Se

40S Ribosomal protein eS19