IL_7ZJX_278
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCU*ACG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJX_278 not in the Motif Atlas
- Geometric match to IL_4E48_002
- Geometric discrepancy: 0.0944
- The information below is about IL_4E48_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
7ZJX|1|S2|C|1740
7ZJX|1|S2|C|1741
7ZJX|1|S2|U|1742
*
7ZJX|1|S2|A|1794
7ZJX|1|S2|C|1795
7ZJX|1|S2|G|1796
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LZ
- Ribosomal protein L24
- Chain SR
- 40S ribosomal protein S6
- Chain ST
- 40S ribosomal protein S8
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