IL_7ZJX_282

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

C(4AC)G*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_282 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1299

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

7ZJX|1|S2|C|1842
7ZJX|1|S2|4AC|1843
7ZJX|1|S2|G|1844
*
7ZJX|1|S2|C|1857
7ZJX|1|S2|G|1858
7ZJX|1|S2|G|1859

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein eS26

Chain SZ

40S ribosomal protein uS11

Chain Sl

60S ribosomal protein L41