3D structure

PDB id
7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome programmed with SECIS and SBP2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CC(OMG)*CUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJX_288 not in the Motif Atlas
Homologous match to IL_8P9A_255
Geometric discrepancy: 0.0956
The information below is about IL_8P9A_255
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_01003.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
174

Unit IDs

7ZJX|1|L5|C|1475
7ZJX|1|L5|C|1476
7ZJX|1|L5|OMG|1477
*
7ZJX|1|L5|C|1610
7ZJX|1|L5|U|1611
7ZJX|1|L5|G|1612

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LF
60S ribosomal protein L4
Chain Ld
60S ribosomal protein L27a

Coloring options:


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