IL_7ZJX_294

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGA*(PSU)A(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_294 not in the Motif Atlas

Homologous match to IL_8C3A_045

Geometric discrepancy: 0.3862

The information below is about IL_8C3A_045

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7ZJX|1|L5|A|1688
7ZJX|1|L5|G|1689
7ZJX|1|L5|A|1690
*
7ZJX|1|L5|PSU|1718
7ZJX|1|L5|A|1719
7ZJX|1|L5|PSU|1720

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LG

Ribosomal_L18_c domain-containing protein

Chain LL

Ribosomal protein L10