IL_7ZJX_297

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7ZJX|1|L5|A|1941

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_297 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.1857

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

7ZJX|1|L5|G|1940
7ZJX|1|L5|A|1941
7ZJX|1|L5|G|1942
7ZJX|1|L5|U|1943
7ZJX|1|L5|G|1944
*
7ZJX|1|L5|C|1953
7ZJX|1|L5|U|1954
7ZJX|1|L5|C|1955

Current chains

Chain L5

28S rRNA

Nearby chains