IL_7ZJX_303

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAGUCGG*CUGU(OMC)

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_303 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.0658

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

7ZJX|1|L5|G|2690
7ZJX|1|L5|G|2691
7ZJX|1|L5|A|2692
7ZJX|1|L5|A|2693
7ZJX|1|L5|G|2694
7ZJX|1|L5|U|2695
7ZJX|1|L5|C|2696
7ZJX|1|L5|G|2697
7ZJX|1|L5|G|2698
*
7ZJX|1|L5|C|3569
7ZJX|1|L5|U|3570
7ZJX|1|L5|G|3571
7ZJX|1|L5|U|3572
7ZJX|1|L5|OMC|3573

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein uL3

Chain LY

60S ribosomal protein L23