IL_7ZJX_323

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

(OMU)CC(PSU)U(OMU)*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_323 not in the Motif Atlas

Homologous match to IL_8P9A_382

Geometric discrepancy: 0.2508

The information below is about IL_8P9A_382

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29223.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7ZJX|1|S2|OMU|116
7ZJX|1|S2|C|117
7ZJX|1|S2|C|118
7ZJX|1|S2|PSU|119
7ZJX|1|S2|U|120
7ZJX|1|S2|OMU|121
*
7ZJX|1|S2|A|344
7ZJX|1|S2|U|345
7ZJX|1|S2|U|346
7ZJX|1|S2|C|347
7ZJX|1|S2|G|348

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein S4

Chain ST

40S ribosomal protein S8