IL_7ZJX_332

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGA*U(PSU)

Length

5 nucleotides

Bulged bases

7ZJX|1|S2|G|1208

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_332 not in the Motif Atlas

Homologous match to IL_8C3A_448

Geometric discrepancy: 0.276

The information below is about IL_8C3A_448

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.11

Basepair signature

cWW-L-cWW

Number of instances in this motif group

46

Unit IDs

7ZJX|1|S2|G|1207
7ZJX|1|S2|G|1208
7ZJX|1|S2|A|1209
*
7ZJX|1|S2|U|1692
7ZJX|1|S2|PSU|1693

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein eS26