IL_7ZJX_333

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC(PSU)*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_333 not in the Motif Atlas

Homologous match to IL_8P9A_432

Geometric discrepancy: 0.3269

The information below is about IL_8P9A_432

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7ZJX|1|S2|C|1231
7ZJX|1|S2|C|1232
7ZJX|1|S2|PSU|1233
*
7ZJX|1|S2|G|1527
7ZJX|1|S2|C|1528
7ZJX|1|S2|G|1529

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Sa

40S ribosomal protein S15

Chain Sb

40S ribosomal protein uS9

Chain Sd

40S ribosomal protein S18

Chain Se

40S Ribosomal protein eS19

Chain Sf

40S ribosomal protein S20