IL_7ZJX_351

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCACU*A(OMG)

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_351 not in the Motif Atlas

Homologous match to IL_8P9A_397

Geometric discrepancy: 0.11

The information below is about IL_8P9A_397

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26900.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

7ZJX|1|S2|C|492
7ZJX|1|S2|C|493
7ZJX|1|S2|A|494
7ZJX|1|S2|C|495
7ZJX|1|S2|U|496
*
7ZJX|1|S2|A|509
7ZJX|1|S2|OMG|510

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein S4

Chain SU

40S ribosomal protein S9

Chain Sj

40S ribosomal protein S24