3D structure

PDB id
7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome programmed with SECIS and SBP2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UC*GGA
Length
5 nucleotides
Bulged bases
7ZJX|1|S2|G|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJX_352 not in the Motif Atlas
Homologous match to IL_8CRE_415
Geometric discrepancy: 0.1085
The information below is about IL_8CRE_415
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28408.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
60

Unit IDs

7ZJX|1|S2|U|496
7ZJX|1|S2|C|497
*
7ZJX|1|S2|G|507
7ZJX|1|S2|G|508
7ZJX|1|S2|A|509

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SP
40S ribosomal protein S4
Chain SU
40S ribosomal protein S9
Chain Sj
40S ribosomal protein S24

Coloring options:


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