IL_7ZO1_001
3D structure
- PDB id
- 7ZO1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SpCas9 bound to CD34 off-target9 DNA substrate
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- AGAG*CAAGUU
- Length
- 10 nucleotides
- Bulged bases (A, C, G, U)
- 28A, 44U
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_45612.4
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 14
Unit IDs
7ZO1|1|A|A|26
7ZO1|1|A|G|27
7ZO1|1|A|A|28
7ZO1|1|A|G|29
*
7ZO1|1|A|C|40
7ZO1|1|A|A|41
7ZO1|1|A|A|42
7ZO1|1|A|G|43
7ZO1|1|A|U|44
7ZO1|1|A|U|45
Current chains
- Chain A
- CD34 sgRNA
Nearby chains
- Chain B
- CRISPR-associated endonuclease Cas9/Csn1
Coloring options: