IL_7ZOD_018
3D structure
- PDB id
- 7ZOD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.56 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 7ZOD|1|b|A|504, 7ZOD|1|b|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZOD_018 not in the Motif Atlas
- Geometric match to IL_5J7L_255
- Geometric discrepancy: 0.057
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
7ZOD|1|b|G|481
7ZOD|1|b|A|482
7ZOD|1|b|A|483
7ZOD|1|b|C|484
*
7ZOD|1|b|G|496
7ZOD|1|b|A|497
7ZOD|1|b|G|498
7ZOD|1|b|U|499
7ZOD|1|b|G|500
7ZOD|1|b|A|501
7ZOD|1|b|A|502
7ZOD|1|b|A|503
7ZOD|1|b|A|504
7ZOD|1|b|A|505
7ZOD|1|b|G|506
7ZOD|1|b|A|507
7ZOD|1|b|A|508
7ZOD|1|b|C|509
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain s
- 50S ribosomal protein L22
- Chain t
- 50S ribosomal protein L23
- Chain u
- 50S ribosomal protein L24
Coloring options: