IL_7ZOD_035

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZOD_035 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.296

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7ZOD|1|b|G|875
7ZOD|1|b|C|876
7ZOD|1|b|A|877
7ZOD|1|b|A|878
7ZOD|1|b|G|879
*
7ZOD|1|b|C|898
7ZOD|1|b|A|899
7ZOD|1|b|A|900
7ZOD|1|b|C|901
7ZOD|1|b|C|902

Current chains

Chain b

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L16