IL_7ZOD_089

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

7ZOD|1|b|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZOD_089 not in the Motif Atlas

Geometric match to IL_3MXH_003

Geometric discrepancy: 0.2799

The information below is about IL_3MXH_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

7ZOD|1|b|U|2401
7ZOD|1|b|U|2402
7ZOD|1|b|C|2403
*
7ZOD|1|b|G|2414
7ZOD|1|b|G|2415

Current chains

Chain b

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L33

Chain 7

50S ribosomal protein L35

Chain l

50S ribosomal protein L15