IL_7ZRS_028

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

7ZRS|1|2|A|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZRS_028 not in the Motif Atlas

Geometric match to IL_8VTW_081

Geometric discrepancy: 0.3182

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

7ZRS|1|2|G|514
7ZRS|1|2|A|515
7ZRS|1|2|G|516
*
7ZRS|1|2|C|536
7ZRS|1|2|G|537
7ZRS|1|2|A|538
7ZRS|1|2|G|539
7ZRS|1|2|G|540
7ZRS|1|2|A|541
7ZRS|1|2|A|542
7ZRS|1|2|C|543

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AJ

40S ribosomal protein S9-A

Chain Ae

40S ribosomal protein S30-A

Chain CA

RQC trigger complex helicase SLH1