IL_7ZRS_078

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZRS_078 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.1237

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7ZRS|1|2|G|1540
7ZRS|1|2|G|1541
7ZRS|1|2|G|1542
7ZRS|1|2|A|1543
7ZRS|1|2|U|1544
7ZRS|1|2|A|1545
*
7ZRS|1|2|U|1566
7ZRS|1|2|U|1567
7ZRS|1|2|C|1568
7ZRS|1|2|A|1569
7ZRS|1|2|A|1570
7ZRS|1|2|C|1571

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AS

40S ribosomal protein S18-A

Chain AT

40S ribosomal protein S19-A

Chain AZ

40S ribosomal protein S25